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NCAR HPC Documentation
Profiling and Debugging
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GitHub
NCAR HPC Documentation
GitHub
Getting Started
Getting Started
End User Agreement
Accounts
Accounts
CIT Passwords
Duo Two-Factor Authentication
Duo Two-Factor Authentication
Enrolling with Duo
SAM
Allocations
Allocations
Managing Your Allocation
NCAR Allocations
NCAR Allocations
NCAR Strategic Capability (NSC) projects
University Allocations
University Allocations
University Large Allocation Request Preparation Instructions
Determining computational resource needs
CISL HPC Allocations Panel
CISL HPC Allocations Panel
Allocation Review Criteria
Conflict of Interest Policy
VPN access
System Usage Policies
Data Retention Policies
Best Practices for Supercomputer Users
Acknowledging NCAR and CISL
Getting Help
Getting Help
Compute Systems and Services
Compute Systems and Services
Derecho
Derecho
Derecho Use Policies
Compiling Code on Derecho
Derecho Software
Moving to Derecho from Cheyenne
Casper
Casper
Casper Use Policies
Casper Node Types
Compiling Code on Casper
Using Remote Desktops
Casper Software
CIRRUS
CIRRUS
Interact with CIRRUS team
Interact with CIRRUS team
Agile Methodology in CIRRUS
Create Tickets in Jira
Deploying Applications
Deploying Applications
Creating Containers
Adding Applications
Custom Alerting
Kubernetes API Access
S3 Storage
Container Registry
Container Registry
Image Management
Vulnerability Scanner
GitHub Actions
GitHub Actions
GitHub Actions Best Practices
GitHub Actions Runners
Jupyter on CIRRUS
Jupyter on CIRRUS
CIRRUS JupyterHub
Conda Environments
GPU Use
Dask
Binder
Secret Manager
Frequent Issues
Service Level Agreements
Open OnDemand
Open OnDemand
Job Composer
Sandbox Apps and Appverse
JupyterHub
JupyterHub
Jupyter and IPython
Additional Resources
Additional Resources
Cron services
Thunder test system
Running Jobs (PBS)
Running Jobs (PBS)
Job Scripts
Job Scripts
Derecho Job Script Examples
Casper job Script Examples
Queues and Charging
Job Dependencies
Peer Scheduling between Systems
Job Preemption with PBS
Common Causes of Job Failures
Common Causes of Job Failures
Checking Memory Use
Storing temporary files
Storage Systems and Data Transfer
Storage Systems and Data Transfer
GLADE (POSIX File Systems)
GLADE (POSIX File Systems)
Campaign storage file system
Scratch Lustre file system
Setting File and Directory Permissions
Using Access Control Lists
Recovering files from snapshots
Removing large number of files
Quasar (Tape Storage)
Quasar (Tape Storage)
Quasar system specifications
Stratus (Object Storage)
Transferring Data
Transferring Data
Globus
Globus
Sharing data and making unattended transfers
SSH based tools
CMIP Analysis Platform
User Environment
User Environment
Using Modules
Customizing your Environment
Environment & Package Managers
Environment & Package Managers
Conda
Pixi
uv
Spack
Containers
Containers
Working with Containers
Example Workflows
HPC Software
HPC Software
Community Models
Community Models
Available Models
Compiling WRF
Compiling WRF-Chem
Data Analysis and Visualization
NCL
MATLAB Parallel Computing Toolbox
Numerical Libraries
Machine Learning and Deep Learning
NCAR Classic Libraries for Geophysics
Utilities
VS Code
Profiling & Debuggers
Profiling & Debuggers
Debugging and Profiling with Forge Tools
Intel Parallel Studio XE
Benchmarks
Benchmarks
NCAR Benchmarking applications - 2015 release
NCAR Benchmarking applications - 2019-2020 release
Tutorials
Tutorials
New User Training
Dask Tutorial
Profiling and Debugging
Profiling and Debugging
Page Outline
Profiling and debugging GPU applications
Managing Permissions and Data Sharing
Using Globus v5
NCAR Storage Spaces
JupyterHub
Remote Desktop Services
NCAR User Group (NHUG)
NCAR User Group (NHUG)
Contributing to the Documentation
Contributing to the Documentation
Check out the full documentation here!
Page Outline
Profiling and debugging GPU applications
Profiling and Debugging
Profiling and debugging GPU applications
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